The CHRIS Salivary Microbiome - Characterization of the salivary microbiome in a large sample of South Tyrolean adults in relation to lifestyle, environment, and genetics (2024)

The oral microbiome is a key component of the human body and has been associated with several habits and diseases. Despite its important role in health, it remains relatively understudied, compared to the gut microbiome. To deepen our understanding of the oral microbiome and its links to host conditions, the main aim of my PhD thesis was to characterize the lifestyle, environmental and genetic determinants of the salivary microbiome using data from CHRISMB, a convenience sample within the Cooperative Health Research in South Tyrol (CHRIS) study. With more than 1,900 samples, CHRISMB is one of the largest salivary microbiome data resources in the world. First, I studied the association between the salivary microbiome and smoking status and degree of exposure both from the compositional and predicted metabolism perspective. I found associations with 44 genera, 11 of which were also proportionally affected by the degree of exposure to tobacco. Intriguingly, these associations highlight a novel role of salivary microbiome metabolism in cardiovascular diseases through periodontium degeneration via the nitrate reduction and extracellular matrix degradation pathways. My second contribution focused on the role of geography, family relatedness, and genetics in shaping CHRISMB diversity. I investigated the associations between household, municipality and altitude of residence, heritability, and genetic marker associations (mbGWAS). I confirmed that cohabitation is a strong driver of microbiome similarity, while municipality and altitude of residence did not show strong associations. Siblings living apart had a more similar microbiota than unrelated and non-cohabiting individuals. Sixteen out of 142 taxa had a significant heritability component, while 34 had a significant household component. A mbGWAS Gene-level analysis resulted in one association between rare variants in the SRFBP1 and LOX genes locus and Selenomonas noxia. This work confirmed that host genetics and familial relationships has a modest but significant association with the salivary microbiome composition and that the environment and lifestyle are strongly associated.In summary, this thesis deepens our understanding of population-level factors associated with salivary microbiome variability, which can help design future hypothesis driven studies.

The CHRIS Salivary Microbiome - Characterization of the salivary microbiome in a large sample of South Tyrolean adults in relation to lifestyle, environment, and genetics / Antonello, Giacomo. - (2024 Apr 19), pp. 1-113.

The CHRIS Salivary Microbiome - Characterization of the salivary microbiome in a large sample of South Tyrolean adults in relation to lifestyle, environment, and genetics

Antonello, Giacomo
2024-04-19

Abstract

The oral microbiome is a key component of the human body and has been associated with several habits and diseases. Despite its important role in health, it remains relatively understudied, compared to the gut microbiome. To deepen our understanding of the oral microbiome and its links to host conditions, the main aim of my PhD thesis was to characterize the lifestyle, environmental and genetic determinants of the salivary microbiome using data from CHRISMB, a convenience sample within the Cooperative Health Research in South Tyrol (CHRIS) study. With more than 1,900 samples, CHRISMB is one of the largest salivary microbiome data resources in the world. First, I studied the association between the salivary microbiome and smoking status and degree of exposure both from the compositional and predicted metabolism perspective. I found associations with 44 genera, 11 of which were also proportionally affected by the degree of exposure to tobacco. Intriguingly, these associations highlight a novel role of salivary microbiome metabolism in cardiovascular diseases through periodontium degeneration via the nitrate reduction and extracellular matrix degradation pathways. My second contribution focused on the role of geography, family relatedness, and genetics in shaping CHRISMB diversity. I investigated the associations between household, municipality and altitude of residence, heritability, and genetic marker associations (mbGWAS). I confirmed that cohabitation is a strong driver of microbiome similarity, while municipality and altitude of residence did not show strong associations. Siblings living apart had a more similar microbiota than unrelated and non-cohabiting individuals. Sixteen out of 142 taxa had a significant heritability component, while 34 had a significant household component. A mbGWAS Gene-level analysis resulted in one association between rare variants in the SRFBP1 and LOX genes locus and Selenomonas noxia. This work confirmed that host genetics and familial relationships has a modest but significant association with the salivary microbiome composition and that the environment and lifestyle are strongly associated.In summary, this thesis deepens our understanding of population-level factors associated with salivary microbiome variability, which can help design future hypothesis driven studies.

  • Scheda breve
  • Scheda completa
  • Scheda completa (DC)

19-apr-2024

XXXV

2023-2024

CIBIO (29/10/12-)

Biomolecular Sciences

Segata, Nicola

Co-supervisore: C. Fuchsberger

no

Inglese

08.1 Tesi di dottorato (Doctoral Thesis)

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Descrizione: PhD Thesis Giacomo Antonello

Tipologia:Tesi di dottorato (Doctoral Thesis)

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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11572/406895

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    FAQs

    What is the composition of the salivary microbiome? ›

    The oral cavity harbors more than 700 diverse microorganisms and is considered the second most diverse site after the gut (Deo and Deshmukh, 2019). In healthy subjects, the core salivary microbiome (SM) includes genera Streptococcus, Veillonella, Neisseria, and Actinomyces (Zaura et al., 2009, 2014).

    What is the relationship of saliva to oral microbiota? ›

    If the amount and components of saliva are not appropriate, the balance of the oral microbiota will be disrupted, and the risk of developing oral diseases, such as dental caries and periodontal disease, will increase.

    What techniques are used to characterize the gut microbiota? ›

    DNA microarrays are mainly used in studies to compare the microbiota between different populations. Advantages of the DNA microarray technique are that it is fast, semi-quantitative and samples can be tested for all species simultaneously.

    What is the description of the oral microbiome? ›

    The oral microbiome encompasses multiple distinct microbial niches (eg, plaque and salivary), typically extending to the distal esophagus, and is one of the more diverse habitats associated with the human body, housing fungi, archaea, protozoa, and bacteria from diverse phyla including Bacteroidetes, Firmicutes, and ...

    What is the salivary gland microbiome? ›

    The salivary microbiome consists of the nonpathogenic, commensal bacteria present in the healthy human salivary glands. It differs from the oral microbiome which is located in the oral cavity. Oral microorganisms tend to adhere to teeth. The oral microbiome possesses its own characteristic microorganisms found there.

    What is the composition and function of saliva quizlet? ›

    A clear, tasteless, odorless, slightly acidic (pH 6.8) viscous fluid, consisting of the secretion from the parotid, sublingual, and submandibular salivary glands and the mucous glands of the oral cavity; its function is to keep the mucous membrane of the mouth moist, to lubricate food during mastication, and, in a ...

    What effect does saliva have on bacteria? ›

    In fact, saliva is rich with effectors that exert direct antimicrobial activity, such as enzymatic breakdown of bacterial cell walls by lysozyme and sequestering iron by lactoferrin [4, 5].

    How does saliva prevent microbial growth? ›

    [47,48] Saliva also contains lysozyme, an enzyme that lyses many bacteria and prevents the overgrowth of oral microbial populations.

    How do you reduce bacteria in your saliva? ›

    Five Tips on How to Kill Bacteria in Mouth
    1. #1: Brushing. Regular brushing is the best way to kill harmful bacteria in your mouth. ...
    2. #2: Flossing. Plaque-causing bacteria love to hide out between your teeth and underneath your gums. ...
    3. #3: Professional Cleanings. ...
    4. #4: Laser Therapy. ...
    5. #5: Switch to Sugar-Free.
    Nov 14, 2023

    How do doctors test gut microbiome? ›

    Healthcare professionals may take a sample of a person's stool and grow the bacteria that they find on it in a lab. This process should allow them to determine what type of bacteria is causing certain symptoms, such as diarrhea, and inform the treatment options that they recommend.

    How do you test for leaky gut microbiome? ›

    Urine test: After fasting overnight, you'll drink a solution containing two “probe molecules” of different sizes. These are usually different types of sugar. Testing your urine will show how many of the larger molecules made it through your gut lining.

    How do you test for IBS gut microbiome? ›

    Gut microbiome testing requires either some or all of a poo sample to be collected in a container and sent to a lab for analysis. The lab analysis can include test tube experiments looking for bacteria that can cause infections, in the same way that we check a urine sample for a urinary tract infection.

    How do you fix oral microbiome? ›

    To prevent the build-up of bad bacteria and ensure a healthy microbiome, doctors recommend:
    1. Controlling the amount of sugary/processed foods you consume.
    2. Insisting on a daily oral care regimen that includes brushing twice a day and flossing.
    3. Drinking plenty of water.
    Jul 24, 2023

    How do you boost your oral microbiome? ›

    Eat, chew or drink (with pulp) prebiotic high fibre foods that help feed probiotic oral bacteria, including nuts, fruits and seeds. Chew more fibre to create an “oral garden mulch” to feed probiotic bacteria.

    How do you tell if you have a mouth infection? ›

    Some common symptoms include:
    1. Sores in the mouth, lips or gums.
    2. Recurring bad breath.
    3. Pain in your teeth, gum or jaw.
    4. Tooth sensitivity to hot or cold foods.
    5. Sore or bleeding gums.
    6. Swelling of the gums, jaw or lymph bodes.
    Jan 31, 2023

    What is the composition of the microbiome? ›

    The human microbiome comprises bacteria, viruses, fungi, protozoans, and archaea, which colonize primarily the gastrointestinal tract, but also the airways and the skin surface from the first days of life and gradually develop and diversify concomitantly with the physiological growth of the individual.

    What is the composition of the salivary glands? ›

    Salivary glands contain three major cell types: acinar cells, ductal cells, and myoepithelial cells. Despite their different locations, each of these glands shares the same fundamental structure, branched ducts that open into the oral cavity and glandular secretory end pieces, called acini, that produce saliva.

    What is the microbiological composition of saliva? ›

    Saliva. The microbial composition of saliva includes the microorganisms shed from various oral niches. Therefore, saliva is considered to be a reservoir of the oral microbiota and also a fingerprint of the entire oral microbiota.

    What is the major composition of saliva? ›

    It is composed of water, mucus, proteins, mineral salts, and amylase. As saliva circulates in the mouth cavity it picks up food debris, bacterial cells, and white blood cells.

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